Bar

No bar plots are automatically generated from FastQC output, but can optionally be added for custom data tables.

Example Data

Barcode	Count
TCACGGGAGTTG	579558
AGTTCAGACGCT	250808
ATTTCGACATGC	245063
TAATGACCACGC	230339
CGATCCGTATTA	215466

Usage to Add

Given the example data for barcode counts:

$ fqc add --x-value Barcode --y-value Count \
      plot_data/2016/160912_M03018/config.json \
      "Barcode Counts" \
      bar \
      example/data/tables/160912_top50barcodes.csv

Plot Options

Option	Value
filename	supports either a single file path or list of lists with [plot tab name, file path] pairs (see Plot Tabs)
tab_name	left main menu entry
status	left main menu icon – supports ‘pass’, ‘fail’, ‘warn’, or alternatively, omitted (see Tab Status)
chart_properties	See table below

Chart Properties

Option	Value
type	the required entry is ‘bar’
subtitle	an optional subtitle for the plot
x_label	x-axis label
x_value	the header label defined in filename corresponding to x-values
y_label	y-axis label
y_value	the header label defined in filename corresponding to y-values

Example JSON entry:

{
    "filename": "bar_plot_example.csv",
    "tab_name": "Barcode Counts",
    "chart_properties": {
        "type": "bar",
        "x_value": "Barcode",
        "x_label": "Barcode",
        "y_value": [ "Count" ],
        "y_label": "Count"
}